../../tmp/servers/virsirnadb/531984243
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi23461tgactacacaggttatgat19
DQ201177.1 Human enterovirus 70 strain J670/71, complete genome 6622...................6640100
X00595.1 Poliovirus type 2 genome (strain Sabin 2 (P712, Ch, 2ab)) 6681...................6699100
D90457.1CXA24CG Human coxsackievirus A24 DNA, complete genome 6705...................6723100
AF462419.1 Human poliovirus 1 RUS-1161-96-001, complete genome 6682...................6700100
AY184220.1 Human poliovirus 2 strain Sabin 2, complete genome 6681...................6699100
AF541919.1 Human poliovirus 3 isolate PV3/NOR/01/8 polyprotein mRNA, complete cd6663...................6681100
AY177685.1 Human poliovirus 2, complete genome 6681...................6699100
AY278549.1 Human poliovirus 2 isolate P2S/Mog65-3 (20120), complete genome 6681...................6699100
AY278553.1 Human poliovirus 1 isolate P1W/Bar65 (19276), complete genome 6678...................6696100
AF448783.1 Human poliovirus 2 strain EGY93-034, complete genome 6683...................6701100
DQ205099.1 Human poliovirus 2 clone S2R9, complete genome 6681...................6699100
DQ890387.1 Human poliovirus 2 strain USA9810768, complete genome 6681...................6699100
EF456707.1 Human poliovirus 3 isolate K/2002 polyprotein gene, complete cds 6633...................6651100
FJ898290.1 Human poliovirus 2 strain Sabine 2 isolate CHN3024/HN/CHN/1999, compl6681...................6699100
HM107835.1 Human poliovirus 2 isolate CHN8316, complete genome 6681...................6699100
AB205395.1 Human enterovirus C genomic RNA, complete genome, strain: Cambodia-026674_..................669194
V01148.1 Genome of human poliovirus type 1 (Mahoney strain). (One of two versi6674............g......669294
V01150.1 Human poliovirus strain Sabin 1 complete genome, strain Sabin 1 6682............g......670094
AJ293918.1 Human poliovirus type 3 complete genome, live-attenuated strain USOL-6678............g......669694
AJ416942.1 Human poliovirus 1 genomic RNA for polyprotein, strain CHAT 10A-11 6682............g......670094
AF462418.1 Human poliovirus 1 99/056-252-14, complete genome 6682............g......670094
AJ430385.1 Human poliovirus 1 genomic RNA for polyprotein gene, strain Cox 6682............g......670094
AY184219.1 Human poliovirus 1 strain Sabin 1, complete genome 6682............g......670094
AY278550.1 Human poliovirus 2 isolate P2S/Mog65-1 (20003), complete genome 6681............g......669994
AY278552.1 Human poliovirus 2 isolate P2S/Mog65-2 (20077), complete genome 6681............g......669994
AF499635.1 Human coxsackievirus A1 strain Tompkins, complete genome 6636...t...............665494
AF499637.1 Human coxsackievirus A13 strain Flores, complete genome 6700...t...............671894
AF499641.1 Human coxsackievirus A19 strain 8663, complete genome 6649......t............666794
AF499643.1 Human coxsackievirus A22 strain Chulman, complete genome 6646............c......666494
AF546702.1 Human coxsackievirus A21 strain Kuykendall, complete genome 6647............g......666594
AF465511.1 Human coxsackievirus A13 strain Flores, complete genome 6700...t...............671894
AF465515.1 Human coxsackievirus A21 strain Kuykendall, complete genome 6647............g......666594
AF538840.1 Human poliovirus 1 isolate TCDCE01-135, complete genome 6652............g......667094
AF538842.1 Human poliovirus 1 isolate TCDC01-330, complete genome 6674............g......669294
AF538843.1 Human poliovirus 1 isolate TCDC01-861, complete genome 6674............g......669294
AF111953.2 Human poliovirus 1 isolate CHN-Hebei/91-2, complete genome 6686............g......670494
AF111966.2 Human poliovirus 1 isolate CHN-Hainan/93-2, complete genome 6686............c......670494
AY876912.1 Human enterovirus Ningbo3-02, complete genome 6700...t...............671894
AY928383.1 Human poliovirus 1 isolate d261-2002037607 polyprotein gene, complete6674............g......669294
AY928384.1 Human poliovirus 1 isolate d224-2002037606 polyprotein gene, complete6674............g......669294
AY928385.1 Human poliovirus 1 isolate d054-2002037604 polyprotein gene, complete6674............g......669294
AY928386.1 Human poliovirus 1 isolate d179-2002037605 polyprotein gene, complete6674............g......669294
AY928387.1 Human poliovirus 1 isolate d018-2002037602 polyprotein gene, complete6674............g......669294
AM040036.1 Human poliovirus 2 complete virion genome, isolate PV2/5021-1/ISR99 6585............a......660394
DQ443001.1 Human coxsackievirus A24 isolate DSO-52/2005, complete genome 6705...t...............672394
DQ443002.1 Human coxsackievirus A24 isolate DSO-26/2005, complete genome 6705...t...............672394
AM084225.1 Human poliovirus 2 RNA for polyprotein, complete genome, genomic RNA,6681...t...............669994
EF682343.1 Human poliovirus 1 strain USA10774 polyprotein gene, complete cds 6656............g......667494
EF682344.1 Human poliovirus 1 strain USA10775 polyprotein gene, complete cds 6656............g......667494
EF682345.1 Human poliovirus 1 strain USA10773 polyprotein gene, complete cds 6656............g......667494
EF682346.1 Human poliovirus 1 strain USA10780 polyprotein gene, complete cds 6656............g......667494
EF682347.1 Human poliovirus 1 strain USA10781 polyprotein gene, complete cds 6656............g......667494
EF682348.1 Human poliovirus 1 strain USA10782 polyprotein gene, complete cds 6656............g......667494
EF682349.1 Human poliovirus 1 strain USA10771 polyprotein gene, complete cds 6656............g......667494
EF682350.1 Human poliovirus 1 strain USA10772 polyprotein gene, complete cds 6656............g......667494
EF682351.1 Human poliovirus 1 strain USA10778 polyprotein gene, complete cds 6656............g......667494
EF682352.1 Human poliovirus 1 strain USA10770 polyprotein gene, complete cds 6656............g......667494
EF682353.1 Human poliovirus 1 strain USA10777 polyprotein gene, complete cds 6656............g......667494
EF682354.1 Human poliovirus 1 strain USA10779 polyprotein gene, complete cds 6656............g......667494
EF682355.1 Human poliovirus 1 strain USA10776 polyprotein gene, complete cds 6656............g......667494
EF682356.1 Human poliovirus 1 strain USA10784, complete genome 6682............g......670094
EF682357.1 Human poliovirus 1 strain USA10785, complete genome 6682............g......670094
EF682358.1 Human poliovirus 1 strain USA10783, complete genome 6682............g......670094
EU794953.1 Human poliovirus 1 isolate A21 polyprotein gene, complete cds 6634............g......665294
EU794954.1 Human poliovirus 1 isolate A49 polyprotein gene, complete cds 6634............g......665294
EU794955.1 Human poliovirus 1 isolate A63 polyprotein gene, complete cds 6634............g......665294
EU794956.1 Human poliovirus 1 isolate A84 polyprotein gene, complete cds 6634............g......665294
EU794957.1 Human poliovirus 1 isolate A88 polyprotein gene, complete cds 6634............g......665294
EU794958.1 Human poliovirus 1 isolate A91 polyprotein gene, complete cds 6634............g......665294
EU794959.1 Human poliovirus 1 isolate A102 polyprotein gene, complete cds 6634............g......665294
EU794960.1 Human poliovirus 1 isolate A105 polyprotein gene, complete cds 6634............g......665294
EU794961.1 Human poliovirus 1 isolate A118 polyprotein gene, complete cds 6634............g......665294
EU794962.1 Human poliovirus 1 isolate A199 polyprotein gene, complete cds 6634............g......665294
EU794963.1 Human poliovirus 1 isolate A449 polyprotein gene, complete cds 6634............g......665294
EU794964.1 Human poliovirus 1 isolate A649 polyprotein gene, complete cds 6634............g......665294
FM955278.1 Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA176699.........g.........671794
FJ769378.1 Human poliovirus 1 strain CHN8184/GZ/CHN/2004, complete genome 6682............g......670094
FJ769383.1 Human poliovirus 1 strain CHN8225c/GZ/CHN/2004, complete genome 6682............g......670094
FJ769384.1 Human poliovirus 1 strain CHN8248c/GZ/CHN/2004, complete genome 6682............g......670094
FJ769385.1 Human poliovirus 1 strain CHN8264c/GZ/CHN/2004, complete genome 6682............g......670094
AF302996.1 Enterovirus 71 strain SHZH98 polyprotein gene, complete cds 6632.......t...........665094
AY465356.1 Human enterovirus 71 strain SHZH03, complete genome 6631.......t...........664994
DQ133458.1 Human enterovirus 71 strain 984 polyprotein gene, complete cds 6631.......t...........664994
DQ133459.1 Human enterovirus 71 strain 1235 polyprotein gene, complete cds 6631.......t...........664994
EF373576.1 Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet6631.......t...........664994
EU703812.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete6631.......t...........664994
EU703813.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete6631.......t...........664994
EU703814.1 Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete6631.......t...........664994
EU812515.1 Human enterovirus 71 strain FY23 from China, complete genome 6634.......t...........665294
EU864507.1 Human enterovirus 71 isolate EV71/Zhejiang08, complete genome 6632.......t...........665094
FJ158600.1 Human enterovirus 71 isolate DTID/ZJU-62, complete genome 6631.......t...........664994
FJ158601.1 Human enterovirus 71 isolate DTID/ZJU-74, complete genome 6631.......t...........664994
FJ194964.1 Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome 6631.......t...........664994
FJ194965.1 Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome 6631.......t...........664994
FJ360544.1 Human enterovirus 71 isolate GZ-08-01, complete genome 6630.......t...........664894
FJ360545.1 Human enterovirus 71 isolate GZ-08-02, complete genome 6631.......t...........664994
FJ360546.1 Human enterovirus 71 isolate GZ-08-03, complete genome 6621.......t...........663994
FJ439769.1 Human enterovirus 71 strain Fuyang-0805, complete genome 6631.......t...........664994
FJ606447.1 Human enterovirus 71 strain BJ08-Z004-3, complete genome 6631.......t...........664994
FJ606448.1 Human enterovirus 71 strain BJ08-Z011-4, complete genome 6631.......t...........664994
FJ606449.1 Human enterovirus 71 strain BJ08-Z020-1, complete genome 6631.......t...........664994
FJ606450.1 Human enterovirus 71 strain BJ08-Z025-5, complete genome 6631.......t...........664994
FJ713137.1 Human enterovirus 71 strain Shanghai 036-2009, complete genome 6633.......t...........665194
FJ828519.1 Human enterovirus 71 isolate BJ08, complete genome 6610.......t...........662894
FJ607334.1 Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g6630.......t...........664894
FJ607335.1 Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g6630.......t...........664894
FJ607336.1 Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete 6629.......t...........664794
FJ607337.1 Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co6630.......t...........664894
FJ607338.1 Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c6630.......t...........664894
GQ892830.1 Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome 6631.......t...........664994
GQ994988.1 Human enterovirus 71 strain Anhui1-09-China, complete genome 6631.......t...........664994
GQ994989.1 Human enterovirus 71 strain Chongqing1-09-China, complete genome 6632.......t...........665094
GQ994990.1 Human enterovirus 71 strain Chongqing2-09-China, complete genome 6631.......t...........664994
GQ994991.1 Human enterovirus 71 strain Chongqing3-09-China, complete genome 6631.......t...........664994
GU196833.1 Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet6443.......t...........646194
GU366191.1 Human enterovirus 71 strain Henan10-08-China, complete genome 6631.......t...........664994
HM003207.1 Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome 6631.......t...........664994
GQ279369.1 Human enterovirus 71 strain SZ/HK08-5, complete genome 6631.......t...........664994
GQ279370.1 Human enterovirus 71 strain SZ/HK08-6, complete genome 6631.......t...........664994
HM002485.1 Human enterovirus 71 strain BJ97, complete genome 6631.......t...........664994
HM002486.1 Human enterovirus 71 strain BJ110, complete genome 6632.......t...........665094
HM002487.1 Human enterovirus 71 strain BJ303, complete genome 6632.......t...........665094
HM002488.1 Human enterovirus 71 strain BJ366, complete genome 6631.......t...........664994
HM053670.1 Human enterovirus 71 strain BJ393, complete genome 6631.......t...........664994
HM053671.1 Human enterovirus 71 strain BJ462, complete genome 6631.......t...........664994
HQ407557.1 Human enterovirus 71 strain LN009, complete genome 6631.......t...........664994
HQ188292.1 Human enterovirus 71 strain Fuyang-0805a, complete genome 6634.......t...........665294
HQ426649.1 Human enterovirus 71 strain 2010FJLY008, complete genome 6629.......t...........664794
HQ325852.1 Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome 6632.......t...........665094
HQ891925.1 Human enterovirus 71 strain Shanghai 36-2009, complete genome 6633.......t...........665194
HQ891926.1 Human enterovirus 71 strain Shanghai 51-2009, complete genome 6633.......t...........665194
HQ891929.1 Human enterovirus 71 strain Shanghai 118-2009, complete genome 6632.......t...........665094
HQ400942.1 Human enterovirus 71 HZ08/Hangzhou/2008, complete genome 6631.......t...........664994
HQ456305.1 Human enterovirus A strain GZ2010-156, complete genome 6631.......t...........664994
HQ456306.1 Human enterovirus A strain GZ2010-134, complete genome 6631.......t...........664994
HQ456307.1 Human enterovirus A strain GZ2010-120, complete genome 6631.......t...........664994
HQ456308.1 Human enterovirus A strain GZ2010-118, complete genome 6631.......t...........664994
HQ456309.1 Human enterovirus A strain GZ08-831, complete genome 6631.......t...........664994
HQ456310.1 Human enterovirus A strain GZ08-530, complete genome 6631.......t...........664994
HQ456311.1 Human enterovirus A strain GZ08-522, complete genome 6631.......t...........664994
HQ456312.1 Human enterovirus A strain GZ08-520, complete genome 6631.......t...........664994
HQ611148.1 Human enterovirus 71 strain AH08/06, complete genome 6631.......t...........664994
JN001860.1 Human enterovirus 71 strain NB/2010/01, complete genome 6632.......t...........665094
AJ132960.1 Human poliovirus 1, complete genome. Isolated from faeces of immunode6683.........g........_670089
AF538841.1 Human poliovirus 1 isolate TCDC01-113, complete genome 6683_...........g......670089
DQ358078.1 Human coxsackievirus A20 serotype CAV20a, complete genome 6686...............c.._670389
EF456706.1 Human poliovirus 1 isolate 7/b/97 nonfunctional polyprotein gene, com6635............g....._665289
EF456706.1 Human poliovirus 1 isolate 7/b/97 nonfunctional polyprotein gene, com4818_____.t..........._483063
EF682359.1 Human poliovirus 1 strain USA10786, complete genome 6683_...........g......670089
AY843302.1 Human enterovirus 77 strain USA/TX97-10394, complete genome 6629.......t.........._664689
EU131776.1 Human enterovirus 71 strain N3340-TW-02, complete genome 6632_......t...........664989
GQ994992.1 Human enterovirus 71 strain Henan2-09-China, complete genome 6624_......t...........664189
GU396280.1 Human enterovirus 71 isolate EV71/Lanzhou01, complete genome 6632_......t...........664989
GU459070.1 Human enterovirus 71 isolate FY23-K12, complete genome 6635_......t...........665289
GU459071.1 Human enterovirus 71 isolate FY23-K14, complete genome 6632_......t...........664989
HM002484.1 Human enterovirus 71 strain BJ67, complete genome 6632_......t...........664989
HM002489.1 Human enterovirus 71 strain BJ398, complete genome 6633_......t...........665089
HM053669.1 Human enterovirus 71 strain BJ293, complete genome 6632_......t...........664989
EF107098.1 Human enterovirus 68 isolate 37-99 from France, complete genome 6575...t.....t.........659389
AB601882.1 Human enterovirus 68 gene for polyprotein, complete cds, strain: JPOC6074...t.....t.........609289
AB601883.1 Human enterovirus 68 gene for polyprotein, complete cds, strain: JPOC6073...t.....t.........609189
AB601884.1 Human enterovirus 68 gene for polyprotein, complete cds, strain: JPOC6074...t.....t.........609289
AB601885.1 Human enterovirus 68 gene for polyprotein, complete cds, strain: JPOC6074...t.....t.........609289
D00625.1POL2CG1 Human poliovirus 2 genomic RNA, complete genome 6675...t.....g.........669389
M12197.1POL2LAN Poliovirus type 2 (Lansing strain), complete genome 6681...t.....g.........669989
AF405682.1 Human poliovirus 1 isolate DOR00041C1, complete genome 6682.........t..c......670089
AY238473.1 Human poliovirus 2 strain MEF-1 polyprotein gene, complete cds 6681...t.....g.........669989
AY278551.1 Human poliovirus 2 isolate P2S/Mog66-4 (21043), complete genome 6681.........g..c......669989
AF448782.1 Human poliovirus 2 strain EGY88-074, complete genome 6681...t...........c...669989
AF499639.1 Human coxsackievirus A17 strain G12, complete genome 6699.........t..g......671789
AF111961.2 Human poliovirus 1 isolate CHN-Guangdong/92-2, complete genome 6686.........t..a......670489
AJ544513.1 Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 6681............c..c...669989
AF111984.2 Human poliovirus 1 isolate CHN-Jiangxi/89-1, complete genome 6685...t.....g.........670389
DQ890388.1 Human poliovirus 2 strain PER8310769, complete genome 6681.........t..a......669989
X92886.1 Echovirus 9 (strain Barty), complete genome 6659......tt...........667789
AF524866.1 Human echovirus 9 strain Barty, complete genome 6661......tt...........667989
AJ849942.1 Human echovirus 3 gene for polyprotein, genomic RNA, strain PicoBank/6634...t...t...........665289
HM777023.1 Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome 6620......tt...........663889
EF667343.1 Simian enterovirus 46 strain RNM5, complete genome 6601...t.....t.........661989
EF667344.1 Human enterovirus 92 strain RJG7, complete genome 6585...t.....c.........660389
AF326764.2 Simian enterovirus 46 strain OM22 (P15), complete genome 6616...t...........c...663489
AB550338.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat6630...t...t...........664889
AB550339.1 Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat6630...t...t...........664889
HQ891923.1 Human enterovirus 71 strain Shanghai 27-2009, complete genome 6632......tt...........665089
HQ891924.1 Human enterovirus 71 strain Shanghai 28-2009, complete genome 6632......tt...........665089
HQ891927.1 Human enterovirus 71 strain Shanghai 64-2009, complete genome 6632......tt...........665089
HQ891928.1 Human enterovirus 71 strain Shanghai 117-2009, complete genome 6632......tt...........665089
EF107097.1 Human enterovirus 94 isolate 19/04 from Democratic Republic of the Co6564............c..c.._658184
X04468.1 Poliovirus type 3 strain 23127 complete genome 6677............g..c.._669484
X04468.1 Poliovirus type 3 strain 23127 complete genome 2300_..........._______231057
AJ132961.1 Human poliovirus 1, complete genome. Isolated from an immunodeficient6683.........g..c....._670084
AF029859.2 Echovirus 1 (strain Farouk / ATCC VR-1038) polyprotein precursor, gen6605......tt.........._662284
AY843304.1 Human enterovirus 86 strain BAN00-10354, complete genome 6608_.......gt.........662584
AY843305.1 Human enterovirus 87 strain BAN01-10396, complete genome 6629......t.gt.........664784
AY843306.1 Human enterovirus 88 strain BAN01-10398, complete genome 6639......t.gt.........665784
AB426610.1 Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 6633......t.gt.........665184
AY421769.1 Human coxsackievirus A14 strain G-14, complete genome 6641...t..tt...........665984
AF499642.1 Human coxsackievirus A20 strain IH35, complete genome 6678.........g..c..c.._669578
AF465514.1 Human coxsackievirus A20 strain IH Pool 35, complete genome 6678.........g..c..c.._669578
X67706.1 Coxsackievirus B5 complete genome 6608...t..tt.c.........662678
FJ914252.2 Human poliovirus 3 strain SWI10947, complete genome 2300_..........._______231057